But, how do files on a CF card ever get corrupt anyway? Although my investigation didn't provide the exact answer, I did find enough info to be of help.
Why do files get corrupt?
The answer: card readers.
The two times I have experienced corrupt files on my CF card has been when I have used a card reader to try and upload photo files to my computer. Not all card reader use has turned my files unreadable, but two of the dozens of times that I have used the card reader, files have been corrupted. Not sure why, or how, but that was my experience, and in my brief investigation I found a few other people across the internet who had similar problems when using a card reader.
The solution: use the camera and it's USB cord to upload any irreplaceable photos.
I still use my card reader all the time. I use it to transfer files easily from one place to the next, or when I am uploading photos from a photo shoot where moving the camera would ruin my set up, and the photo is easily replaceable since I'm doing a studio photo shoot. But if I have wedding pics, or a location shoot to transfer to my computer, I ditch the card reader, and connect my camera to the computer using the USB cord. I have uploaded photo files using my camera's USB cord hundreds of times without a hitch.
If you're concerned about this sucking your camera's battery, consider buying a spare. A spare battery will give you extra juice for file uploads, while still having enough power for shooting Billy's birthday party.
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